Affymetrix chicken annotation data (chip chickenggug)

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Documentation for package ‘chickenggug.db’ version 14.0.0

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chickenggug Bioconductor annotation data package
chickenggug.db Bioconductor annotation data package
chickenggugACCNUM Map Manufacturer identifiers to Accession Numbers
chickenggugALIAS2PROBE Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
chickenggugCHR Map Manufacturer IDs to Chromosomes
chickenggugCHRLENGTHS A named vector for the length of each of the chromosomes
chickenggugCHRLOC Map Manufacturer IDs to Chromosomal Location
chickenggugCHRLOCEND Map Manufacturer IDs to Chromosomal Location
chickenggugENSEMBL Map Ensembl gene accession numbers with Entrez Gene identifiers
chickenggugENSEMBL2PROBE Map Ensembl gene accession numbers with Entrez Gene identifiers
chickenggugENTREZID Map between Manufacturer Identifiers and Entrez Gene
chickenggugENZYME Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
chickenggugENZYME2PROBE Map between Enzyme Commission Numbers and Manufacturer Identifiers
chickenggugGENENAME Map between Manufacturer IDs and Genes
chickenggugGO Map between Manufacturer IDs and Gene Ontology (GO)
chickenggugGO2ALLPROBES Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
chickenggugGO2PROBE Map between Gene Ontology (GO) and Manufacturer Identifiers
chickenggugLOCUSID Map between Manufacturer Identifiers and Entrez Gene
chickenggugMAPCOUNTS Number of mapped keys for the maps in package chickenggug.db
chickenggugORGANISM The Organism information for chickenggug
chickenggugORGPKG The Organism information for chickenggug
chickenggugPATH Mappings between probe identifiers and KEGG pathway identifiers
chickenggugPATH2PROBE Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
chickenggugPFAM Map Manufacturer IDs to Pfam IDs
chickenggugPMID Map between Manufacturer Identifiers and PubMed Identifiers
chickenggugPMID2PROBE Map between PubMed Identifiers and Manufacturer Identifiers
chickenggugPROSITE Map Manufacturer IDs to PROSITE ID
chickenggugREFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
chickenggugSYMBOL Map between Manufacturer Identifiers and Gene Symbols
chickenggugUNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers
chickenggugUNIPROT Map Uniprot accession numbers with Entrez Gene identifiers
chickenggugUNIPROT2PROBE Map Uniprot accession numbers with Entrez Gene identifiers
chickenggug_dbconn Collect information about the package annotation DB
chickenggug_dbfile Collect information about the package annotation DB
chickenggug_dbInfo Collect information about the package annotation DB
chickenggug_dbschema Collect information about the package annotation DB