Affymetrix bovine annotation data (chip bovinebtrefseq)

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Documentation for package ‘bovinebtrefseq.db’ version 15.0.0

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bovinebtrefseq Bioconductor annotation data package
bovinebtrefseq.db Bioconductor annotation data package
bovinebtrefseqACCNUM Map Manufacturer identifiers to Accession Numbers
bovinebtrefseqALIAS2PROBE Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
bovinebtrefseqCHR Map Manufacturer IDs to Chromosomes
bovinebtrefseqCHRLENGTHS A named vector for the length of each of the chromosomes
bovinebtrefseqCHRLOC Map Manufacturer IDs to Chromosomal Location
bovinebtrefseqCHRLOCEND Map Manufacturer IDs to Chromosomal Location
bovinebtrefseqENSEMBL Map Ensembl gene accession numbers with Entrez Gene identifiers
bovinebtrefseqENSEMBL2PROBE Map Ensembl gene accession numbers with Entrez Gene identifiers
bovinebtrefseqENTREZID Map between Manufacturer Identifiers and Entrez Gene
bovinebtrefseqENZYME Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
bovinebtrefseqENZYME2PROBE Map between Enzyme Commission Numbers and Manufacturer Identifiers
bovinebtrefseqGENENAME Map between Manufacturer IDs and Genes
bovinebtrefseqGO Map between Manufacturer IDs and Gene Ontology (GO)
bovinebtrefseqGO2ALLPROBES Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
bovinebtrefseqGO2PROBE Map between Gene Ontology (GO) and Manufacturer Identifiers
bovinebtrefseqLOCUSID Map between Manufacturer Identifiers and Entrez Gene
bovinebtrefseqMAPCOUNTS Number of mapped keys for the maps in package bovinebtrefseq.db
bovinebtrefseqORGANISM The Organism information for bovinebtrefseq
bovinebtrefseqORGPKG The Organism information for bovinebtrefseq
bovinebtrefseqPATH Mappings between probe identifiers and KEGG pathway identifiers
bovinebtrefseqPATH2PROBE Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
bovinebtrefseqPFAM Map Manufacturer IDs to Pfam IDs
bovinebtrefseqPMID Map between Manufacturer Identifiers and PubMed Identifiers
bovinebtrefseqPMID2PROBE Map between PubMed Identifiers and Manufacturer Identifiers
bovinebtrefseqPROSITE Map Manufacturer IDs to PROSITE ID
bovinebtrefseqREFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
bovinebtrefseqSYMBOL Map between Manufacturer Identifiers and Gene Symbols
bovinebtrefseqUNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers
bovinebtrefseqUNIPROT Map Uniprot accession numbers with Entrez Gene identifiers
bovinebtrefseqUNIPROT2PROBE Map Uniprot accession numbers with Entrez Gene identifiers
bovinebtrefseq_dbconn Collect information about the package annotation DB
bovinebtrefseq_dbfile Collect information about the package annotation DB
bovinebtrefseq_dbInfo Collect information about the package annotation DB
bovinebtrefseq_dbschema Collect information about the package annotation DB