Affymetrix chicken annotation data (chip chickenggrefseq)

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Documentation for package ‘chickenggrefseq.db’ version 15.1.0

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chickenggrefseq Bioconductor annotation data package
chickenggrefseq.db Bioconductor annotation data package
chickenggrefseqACCNUM Map Manufacturer identifiers to Accession Numbers
chickenggrefseqALIAS2PROBE Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
chickenggrefseqCHR Map Manufacturer IDs to Chromosomes
chickenggrefseqCHRLENGTHS A named vector for the length of each of the chromosomes
chickenggrefseqCHRLOC Map Manufacturer IDs to Chromosomal Location
chickenggrefseqCHRLOCEND Map Manufacturer IDs to Chromosomal Location
chickenggrefseqENSEMBL Map Ensembl gene accession numbers with Entrez Gene identifiers
chickenggrefseqENSEMBL2PROBE Map Ensembl gene accession numbers with Entrez Gene identifiers
chickenggrefseqENTREZID Map between Manufacturer Identifiers and Entrez Gene
chickenggrefseqENZYME Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
chickenggrefseqENZYME2PROBE Map between Enzyme Commission Numbers and Manufacturer Identifiers
chickenggrefseqGENENAME Map between Manufacturer IDs and Genes
chickenggrefseqGO Map between Manufacturer IDs and Gene Ontology (GO)
chickenggrefseqGO2ALLPROBES Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
chickenggrefseqGO2PROBE Map between Gene Ontology (GO) and Manufacturer Identifiers
chickenggrefseqLOCUSID Map between Manufacturer Identifiers and Entrez Gene
chickenggrefseqMAPCOUNTS Number of mapped keys for the maps in package chickenggrefseq.db
chickenggrefseqORGANISM The Organism information for chickenggrefseq
chickenggrefseqORGPKG The Organism information for chickenggrefseq
chickenggrefseqPATH Mappings between probe identifiers and KEGG pathway identifiers
chickenggrefseqPATH2PROBE Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
chickenggrefseqPFAM Map Manufacturer IDs to Pfam IDs
chickenggrefseqPMID Map between Manufacturer Identifiers and PubMed Identifiers
chickenggrefseqPMID2PROBE Map between PubMed Identifiers and Manufacturer Identifiers
chickenggrefseqPROSITE Map Manufacturer IDs to PROSITE ID
chickenggrefseqREFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
chickenggrefseqSYMBOL Map between Manufacturer Identifiers and Gene Symbols
chickenggrefseqUNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers
chickenggrefseqUNIPROT Map Uniprot accession numbers with Entrez Gene identifiers
chickenggrefseqUNIPROT2PROBE Map Uniprot accession numbers with Entrez Gene identifiers
chickenggrefseq_dbconn Collect information about the package annotation DB
chickenggrefseq_dbfile Collect information about the package annotation DB
chickenggrefseq_dbInfo Collect information about the package annotation DB
chickenggrefseq_dbschema Collect information about the package annotation DB